Julie Dickerson
Email: julied@iastate.edu
Phone: 515-294-7705
Title(s):
David C. Nicholas Professor
Office
3123 Coover
2520 Osborn Dr
Ames, IA 50011-1046
Information
Education:
Ph.D., Electrical Engineering, University of Southern California (1993)
M.S., Electrical Engineering, University of Southern California (1986)
B.S., Electrical Engineering, University of California, San Diego (1983)
Research Areas:
Core Area(s): Human-computer interaction, bioinformatics and computational biology, communications and signal processing, systems biology, bioinformatics, pattern recognition, data visualization, real-time sensor networks
Department’s Strategic Area(s): Data, decisions, networks & autonomy; bioengineering
Publications
Google Scholar Profile: https://scholar.google.com/citations?user=H92j-LIAAAAJ&hl=en
- G Kandoi, JA Dickerson, “Tissue-specific mouse mRNA isoform networks”, Nature Scientific Reports, 9(1) 1-24, 2019.
- R Liu, JA Dickerson, “Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq,” PLoS Computational Biology, 13(11), e1005851.
- Zhou WG, Dickerson JA, “A novel class dependent feature selection method for cancer biomarker discovery,” Computers in Biology and Medicine, 47(1), 66-75, 2014, http://dx.doi.org/10.1016/j.compbiomed.2014.01.014.
- Royce, L, E Boggess, Y. Fu, P. Liu, JV Shanks, J.A. Dickerson, L Jarboe, “Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage,” PLoS ONE, 2014.
- Nucleic Acids Research, 2012 Database Issue,P. Bais*, S.M. Moon-Quanbeck, B.J. Nikolau, J.A. Dickerson, “Plantmetabolomics.org: mass spectrometry-based Arabidopsis metabolomics,” Nucleic Acids Research, 2012 Database Issue, doi: 10.1093/nar/gkr1006
- P. Bais, S.M. Moon-Quanbeck, B.J. Nikolau, J.A. Dickerson, “Plantmetabolomics.org: mass spectrometry-based Arabidopsis metabolomics,” Nucleic Acids Research, 2012 Database Issue, doi: 10.1093/nar/gkr1006
- Fu, Y., L.R. Jarboe, J.A. Dickerson, “Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities,” BMC Bioinformatics, 12:233, 2011, doi:10.1186/1471-2105-12-233.
- Ming J., D. Reiners, E.S. Wurtele, J.A. Dickerson, “MetNetGE: Visualizing Biological Networks in Hierarchical Views and 3D Tiered Layouts,” BMC Bioinformatics 2010, 11:469 doi:10.1186/1471-2105-11-469, 2010.
- JA Etzel, EL Johnsen, J.A. Dickerson, R Adolphs, “Cardiovascular and Respiratory Responses during Musical Mood Induction,” International Journal of Psychophysiology, 2006
- P Du, J Gong, ES Wurtele, and J.A. Dickerson, “Modeling Gene Expression Networks using Fuzzy Logic,” Special issue of IEEE Transactions on Systems, Man and Cybernetics, Part B, 35(6):1351-1359, 2005
Departments
Affiliations
Interests
BioinformaticsData miningDeep learningGene network inferenceGenome to Phenome mappingMachine Learning and Deep LearningModeling metabolic networksPattern recognition